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I indeed have a domain name pointing to the VPS IP, with Caddy managing TLS. Other apps are exposed this way, and I will do the same for the qBittorrent WebUI as well. I like having Caddy as a single gateway where I can apply security configs and monitor all traffic, I was hoping I would be able to pass torrent traffic through it as well but everybody seems very much against it.
I already have wireguard setup as you describe so I guess I'll just give up on passing torrent traffic through the proxies and just open a localhost port on the qBittorrent container...