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I don't think this satisfies your use cases perfectly but an interesting solution for sure. I prefer note taking in vscode using the patricklee.vsnotes extension. Here's a write up on it at c/vscode. You can commit your note changes to a git repo on github or other elsewhere, giving you access from many different places.
I have manual commands creating notes and symlinked notes dirs and a global gitignore for something similar but I namespace per repo which is much more convenient for me.
Well that's interesting! But I don't write see how that would work. Mind explaining a bit more? Perhaps s little demo with notes from two workspaces?