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Logseq to some extent, but it's set up to be a journal/ meeting notes where you tag pages, add documents, etc. it would be up to how you've tagged things. Does have a graph view of your pages and whiteboard feature.
Personally it wasn't exactly what i wanted out of a PKM but it is really powerful. It's intended to handle taking notes efficiently from meetings and then somewhat self organizing the notes as long as you tag stuff.