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Because they have to have a way for legacy users to maintain functionality. Going forward though, new drives in new devices are handled differently. It's basically a quality control type thing - they're providing the support and warranty for them, so they're only "guaranteeing" that their checks work on their drives. That makes sense. They don't want to be on the hook for saying that a drive that isn't theirs was perfectly healthy and then it drops dead an hour later and you lose all your data.
Again though, the disks still work. The compatibility lists simply tell you if they are officially supported and will get certain features.
Avoiding them because of missing a few proprietary synology disk health checks is such a strange thing to do lol. You won't get synologys disk health checks if you were to make your own server, so why is not having them on a synology a deal breaker?