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Because that is what is happening. Wood filament is just PLA mixed with wood particles suspended in it. These particles are very likely getting stuck in the printer nozzle and stopping any more filament from being extruded. This is not the only cause of under extrusion like this but the most likely.
Given it clears its self up it is probably that the blockages are clearing themselves eventually with enough time/pressure/heat behind it. Or it could be a particle moving around inside the head (which I think is less likely).
Best thing is probably to get a larger nozzle that will be less prone to being blocked by larger particles in the wood PLA. You can also clear the nozzle as well with a tiny needle or a cold pull of the filament. This may help for a bit it there is stuff built up inside the nozzle or if it the blockage is self clearing it may not help at all (but wont hurt anything). But the better solution is likely a larger nozzle.